Variant report
Variant | rs9492874 |
---|---|
Chromosome Location | chr6:131557463-131557464 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10484763 | 0.82[EUR][1000 genomes] |
rs11154622 | 0.83[EUR][1000 genomes] |
rs11754401 | 0.82[EUR][1000 genomes] |
rs11758994 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs11759793 | 0.83[EUR][1000 genomes] |
rs11759926 | 0.83[EUR][1000 genomes] |
rs1190788 | 0.83[ASN][1000 genomes] |
rs1190794 | 0.83[ASN][1000 genomes] |
rs1190796 | 0.83[ASN][1000 genomes] |
rs1190799 | 0.83[ASN][1000 genomes] |
rs1190800 | 0.83[ASN][1000 genomes] |
rs1190801 | 0.83[ASN][1000 genomes] |
rs1190805 | 0.92[ASN][1000 genomes] |
rs1190806 | 0.92[ASN][1000 genomes] |
rs11961577 | 0.83[EUR][1000 genomes] |
rs1209159 | 0.83[ASN][1000 genomes] |
rs13195700 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs13200165 | 0.82[EUR][1000 genomes] |
rs13205441 | 0.81[EUR][1000 genomes] |
rs13206776 | 0.81[EUR][1000 genomes] |
rs1729549 | 0.83[ASN][1000 genomes] |
rs1729558 | 0.83[ASN][1000 genomes] |
rs1746470 | 0.83[ASN][1000 genomes] |
rs1746471 | 0.83[ASN][1000 genomes] |
rs1746474 | 0.83[ASN][1000 genomes] |
rs17787964 | 0.83[ASN][1000 genomes] |
rs1885641 | 0.83[EUR][1000 genomes] |
rs2327102 | 0.82[EUR][1000 genomes] |
rs28360555 | 0.80[EUR][1000 genomes] |
rs34326915 | 0.83[EUR][1000 genomes] |
rs34601891 | 0.82[EUR][1000 genomes] |
rs35017713 | 0.81[EUR][1000 genomes] |
rs35561719 | 0.82[EUR][1000 genomes] |
rs3777489 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs3903759 | 0.92[ASN][1000 genomes] |
rs4424112 | 0.80[EUR][1000 genomes] |
rs56318353 | 0.83[ASN][1000 genomes] |
rs67021539 | 0.83[EUR][1000 genomes] |
rs67399092 | 0.81[EUR][1000 genomes] |
rs749375 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs9483238 | 0.81[EUR][1000 genomes] |
rs9492861 | 0.92[ASN][1000 genomes] |
rs9492868 | 0.80[EUR][1000 genomes] |
rs9492877 | 0.82[EUR][1000 genomes] |
rs9492883 | 0.81[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1032955 | chr6:131298803-131818502 | Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
2 | nsv538443 | chr6:131298803-131818502 | Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
3 | nsv830807 | chr6:131390952-131581931 | Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
4 | nsv886664 | chr6:131443843-131754930 | Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
5 | nsv886665 | chr6:131518894-131611309 | Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 1 gene(s) | inside rSNPs | diseases |
6 | nsv830808 | chr6:131521115-131735320 | Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 1 gene(s) | inside rSNPs | diseases |
7 | esv1835599 | chr6:131554291-131590766 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:131535200-131562200 | Weak transcription | Primary hematopoietic stem cells | blood |
2 | chr6:131543000-131571200 | Weak transcription | Adipose Nuclei | Adipose |
3 | chr6:131546600-131565400 | Weak transcription | Primary T helper cells PMA-I stimulated | -- |
4 | chr6:131546600-131565600 | Weak transcription | Primary T helper naive cells fromperipheralblood | blood |
5 | chr6:131546600-131566000 | Weak transcription | Primary T helper cells fromperipheralblood | blood |