Variant report

Variant	rs9495530
Chromosome Location	chr6:139900578-139900579
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:139694161..139696891-chr6:139900179..139903169,2	MCF-7	breast:
2	chr6:139854988..139856968-chr6:139898373..139901170,2	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10080595	0.83[AMR][1000 genomes]
rs17069036	0.83[AMR][1000 genomes]
rs17069142	0.83[AMR][1000 genomes]
rs9484290	0.83[AMR][1000 genomes]
rs9495531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495533	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139892400-139903200	Weak transcription	Placenta	Placenta
2	chr6:139897800-139901000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:139898000-139900800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr6:139898000-139901200	Weak transcription	GM12878-XiMat	blood
5	chr6:139898800-139902400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:139899000-139907000	Weak transcription	K562	blood
7	chr6:139899600-139901000	Enhancers	Placenta Amnion	Placenta Amnion
8	chr6:139899600-139908800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:139899800-139900800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:139899800-139901800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr6:139900000-139902200	Weak transcription	Fetal Muscle Leg	muscle
12	chr6:139900000-139904000	Weak transcription	NHLF	lung
13	chr6:139900000-139904400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:139900000-139907400	Weak transcription	Pancreas	Pancrea
15	chr6:139900000-139908800	Weak transcription	Fetal Lung	lung
16	chr6:139900200-139901800	Weak transcription	Fetal Kidney	kidney
17	chr6:139900200-139903600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:139900200-139903800	Weak transcription	NH-A	brain
19	chr6:139900200-139904000	Weak transcription	NHEK	skin
20	chr6:139900200-139904200	Weak transcription	HMEC	breast
21	chr6:139900200-139904600	Weak transcription	Fetal Heart	heart
22	chr6:139900200-139909000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:139900400-139901000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr6:139900400-139902000	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr6:139900400-139903800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:139900400-139904000	Weak transcription	Osteobl	bone
27	chr6:139900400-139904200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:139900400-139904200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr6:139900400-139904200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr6:139900400-139904200	Weak transcription	HSMM	muscle
31	chr6:139900400-139904200	Weak transcription	NHDF-Ad	bronchial
32	chr6:139900400-139908800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:139900400-139908800	Weak transcription	Fetal Intestine Large	intestine

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