Variant report

Variant	rs17069142
Chromosome Location	chr6:139965961-139965962
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139964170..139966634-chr6:139972599..139975105,2	K562	blood:
2	chr6:139692331..139697169-chr6:139965661..139973666,12	K562	blood:
3	chr6:139958509..139960100-chr6:139965724..139967444,2	K562	blood:
4	chr6:139965051..139967507-chr6:139970939..139973680,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10484822	0.85[AMR][1000 genomes]
rs17069036	1.00[AMR][1000 genomes]
rs9484292	0.85[AMR][1000 genomes]
rs9495530	0.83[AMR][1000 genomes]
rs9495531	0.83[AMR][1000 genomes]
rs9495540	0.85[AMR][1000 genomes]
rs9495547	0.85[AMR][1000 genomes]
rs9495549	0.85[AMR][1000 genomes]
rs9495550	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv516840	chr6:139960833-140053704	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139957200-139976000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:139958800-139967200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:139962200-139969200	Enhancers	K562	blood
4	chr6:139962400-139967200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:139962600-139966200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr6:139963000-139966200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:139963400-139967200	Enhancers	Fetal Heart	heart
8	chr6:139963600-139969200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:139965000-139966800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:139965000-139966800	Enhancers	Fetal Intestine Small	intestine
11	chr6:139965000-139966800	Enhancers	Right Atrium	heart
12	chr6:139965000-139967200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:139965000-139967200	Enhancers	Colon Smooth Muscle	Colon
14	chr6:139965000-139967200	Enhancers	Fetal Stomach	stomach
15	chr6:139965000-139967200	Enhancers	Left Ventricle	heart
16	chr6:139965000-139967200	Enhancers	Rectal Smooth Muscle	rectum
17	chr6:139965000-139967200	Enhancers	Stomach Smooth Muscle	stomach
18	chr6:139965200-139966000	Enhancers	Colonic Mucosa	Colon
19	chr6:139965200-139966200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:139965200-139966400	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr6:139965200-139966800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:139965200-139966800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:139965200-139966800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:139965200-139966800	Enhancers	Placenta Amnion	Placenta Amnion
25	chr6:139965200-139967000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr6:139965200-139967000	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr6:139965200-139967200	Enhancers	Fetal Muscle Leg	muscle
28	chr6:139965400-139966800	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr6:139965400-139967000	Enhancers	Ovary	ovary
30	chr6:139965400-139967000	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr6:139965600-139966200	Enhancers	HSMM	muscle
32	chr6:139965600-139966400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr6:139965600-139966600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:139965600-139966600	Weak transcription	Placenta	Placenta
35	chr6:139965600-139967000	Enhancers	Muscle Satellite Cultured Cells	--
36	chr6:139965600-139967200	Enhancers	HSMMtube	muscle

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