Variant report

Variant	rs17069036
Chromosome Location	chr6:139924447-139924448
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139907382..139909260-chr6:139922632..139925256,2	K562	blood:
2	chr6:139884892..139886591-chr6:139922828..139925266,2	K562	blood:
3	chr6:139693414..139696217-chr6:139922641..139924878,2	K562	blood:
4	chr6:139918023..139920121-chr6:139924090..139925630,2	K562	blood:
5	chr6:139924274..139926752-chr6:139931019..139932700,2	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10484822	0.85[AMR][1000 genomes]
rs17069142	1.00[AMR][1000 genomes]
rs9484292	0.85[AMR][1000 genomes]
rs9495530	0.83[AMR][1000 genomes]
rs9495531	0.83[AMR][1000 genomes]
rs9495540	0.85[AMR][1000 genomes]
rs9495547	0.85[AMR][1000 genomes]
rs9495549	0.85[AMR][1000 genomes]
rs9495550	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139907600-139925200	Weak transcription	Aorta	Aorta
2	chr6:139909400-139925200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:139913000-139928600	Weak transcription	Ovary	ovary
4	chr6:139914400-139925200	Weak transcription	Spleen	Spleen
5	chr6:139918800-139925200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:139919400-139925200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:139919400-139925200	Weak transcription	Esophagus	oesophagus
8	chr6:139919600-139925200	Weak transcription	Brain Hippocampus Middle	brain
9	chr6:139919800-139927600	Weak transcription	Fetal Kidney	kidney
10	chr6:139919800-139928200	Weak transcription	Fetal Lung	lung
11	chr6:139920400-139925200	Weak transcription	Fetal Brain Male	brain
12	chr6:139920800-139924800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:139920800-139924800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:139920800-139925200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr6:139920800-139928600	Weak transcription	Osteobl	bone
16	chr6:139921000-139925200	Weak transcription	Fetal Stomach	stomach
17	chr6:139922200-139924600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:139923400-139924600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:139923400-139925200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr6:139923400-139925400	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr6:139923600-139924600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr6:139923600-139925200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:139924000-139924600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr6:139924200-139925200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr6:139924400-139925000	Enhancers	K562	blood
26	chr6:139924400-139926600	Weak transcription	Placenta	Placenta
27	chr6:139924400-139928400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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