Variant report

Variant	rs9484292
Chromosome Location	chr6:139925125-139925126
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139907382..139909260-chr6:139922632..139925256,2	K562	blood:
2	chr6:139884892..139886591-chr6:139922828..139925266,2	K562	blood:
3	chr6:139918023..139920121-chr6:139924090..139925630,2	K562	blood:
4	chr6:139924274..139926752-chr6:139931019..139932700,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10484822	0.88[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17069036	0.85[AMR][1000 genomes]
rs17069142	0.85[AMR][1000 genomes]
rs9495540	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495547	0.82[ASW][hapmap];1.00[MEX][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495549	1.00[AMR][1000 genomes]
rs9495550	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139907600-139925200	Weak transcription	Aorta	Aorta
2	chr6:139909400-139925200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:139913000-139928600	Weak transcription	Ovary	ovary
4	chr6:139914400-139925200	Weak transcription	Spleen	Spleen
5	chr6:139918800-139925200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:139919400-139925200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:139919400-139925200	Weak transcription	Esophagus	oesophagus
8	chr6:139919600-139925200	Weak transcription	Brain Hippocampus Middle	brain
9	chr6:139919800-139927600	Weak transcription	Fetal Kidney	kidney
10	chr6:139919800-139928200	Weak transcription	Fetal Lung	lung
11	chr6:139920400-139925200	Weak transcription	Fetal Brain Male	brain
12	chr6:139920800-139925200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr6:139920800-139928600	Weak transcription	Osteobl	bone
14	chr6:139921000-139925200	Weak transcription	Fetal Stomach	stomach
15	chr6:139923400-139925200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:139923400-139925400	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr6:139923600-139925200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:139924200-139925200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:139924400-139926600	Weak transcription	Placenta	Placenta
20	chr6:139924400-139928400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:139924600-139925200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr6:139924600-139928600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr6:139924800-139925400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr6:139925000-139925200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr6:139925000-139928600	Weak transcription	K562	blood

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