Variant report

Variant	rs9495540
Chromosome Location	chr6:139934615-139934616
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10484822	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17069036	0.85[AMR][1000 genomes]
rs17069142	0.85[AMR][1000 genomes]
rs9484292	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495547	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495549	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495550	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv969451	chr6:139933131-139942320	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139929200-139941000	Weak transcription	Aorta	Aorta
2	chr6:139929200-139944000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:139932200-139935000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr6:139933400-139938600	Weak transcription	K562	blood
5	chr6:139933600-139935200	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr6:139933600-139935800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:139933800-139934800	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr6:139934000-139935000	Enhancers	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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