Variant report

Variant	rs10484822
Chromosome Location	chr6:139932147-139932148
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139930810..139933752-chr6:140097356..140098943,2	K562	blood:
2	chr6:139695674..139697461-chr6:139931043..139933413,2	MCF-7	breast:
3	chr6:139924274..139926752-chr6:139931019..139932700,2	K562	blood:
4	chr6:139695536..139697565-chr6:139930414..139932692,2	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17069036	0.85[AMR][1000 genomes]
rs17069142	0.85[AMR][1000 genomes]
rs9484292	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495540	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495547	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495549	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495550	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139929000-139932800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:139929200-139932200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr6:139929200-139932600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:139929200-139932800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:139929200-139932800	Weak transcription	Pancreas	Pancrea
6	chr6:139929200-139941000	Weak transcription	Aorta	Aorta
7	chr6:139929200-139944000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:139929400-139932200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:139929600-139932600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:139929800-139932200	Weak transcription	K562	blood
11	chr6:139930000-139932400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr6:139930000-139932600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:139930000-139932600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr6:139930200-139932600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr6:139930400-139932400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:139931400-139932600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr6:139931400-139932800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:139931600-139932800	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr6:139931600-139933600	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr6:139932000-139933600	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr6:139932000-139933800	Enhancers	Primary neutrophils fromperipheralblood	blood

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