Variant report

Variant	rs9495549
Chromosome Location	chr6:139949347-139949348
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10484822	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17069036	0.85[AMR][1000 genomes]
rs17069142	0.85[AMR][1000 genomes]
rs9484292	1.00[AMR][1000 genomes]
rs9495540	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495547	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9495550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139944800-139949600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:139946200-139949600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:139946600-139955400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:139946800-139949600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr6:139946800-139950000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr6:139947400-139949400	Enhancers	Fetal Stomach	stomach
7	chr6:139947400-139949600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr6:139948000-139949400	Enhancers	Primary hematopoietic stem cells	blood
9	chr6:139948000-139949600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:139948000-139949600	Enhancers	Adipose Nuclei	Adipose
11	chr6:139948000-139949800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr6:139948000-139949800	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr6:139948200-139949800	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr6:139948600-139949400	Weak transcription	Right Atrium	heart
15	chr6:139948600-139950000	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr6:139948800-139949400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:139949000-139949600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:139949200-139949600	Enhancers	Psoas Muscle	Psoas
19	chr6:139949200-139954000	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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