Variant report
| Variant | rs9496410 |
|---|---|
| Chromosome Location | chr6:142853628-142853629 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs13437156 | 1.00[AMR][1000 genomes] |
| rs1411147 | 1.00[AMR][1000 genomes] |
| rs6921559 | 1.00[AMR][1000 genomes] |
| rs9484627 | 1.00[AMR][1000 genomes] |
| rs9484628 | 1.00[AMR][1000 genomes] |
| rs9484629 | 1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes] |
| rs9484634 | 1.00[AMR][1000 genomes] |
| rs9484635 | 1.00[AMR][1000 genomes] |
| rs9484636 | 1.00[AMR][1000 genomes] |
| rs9484638 | 1.00[AMR][1000 genomes] |
| rs9484640 | 1.00[ASW][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[AMR][1000 genomes] |
| rs9484641 | 1.00[AMR][1000 genomes] |
| rs9484644 | 1.00[AMR][1000 genomes] |
| rs9496336 | 1.00[AMR][1000 genomes] |
| rs9496350 | 1.00[AMR][1000 genomes] |
| rs9496351 | 1.00[AMR][1000 genomes] |
| rs9496359 | 1.00[AMR][1000 genomes] |
| rs9496362 | 1.00[AMR][1000 genomes] |
| rs9496363 | 1.00[AMR][1000 genomes] |
| rs9496375 | 1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes] |
| rs9496376 | 1.00[AMR][1000 genomes] |
| rs9496381 | 1.00[ASW][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes] |
| rs9496383 | 1.00[AMR][1000 genomes] |
| rs9496384 | 1.00[AMR][1000 genomes] |
| rs9496385 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9496386 | 1.00[AMR][1000 genomes] |
| rs9496387 | 1.00[AMR][1000 genomes] |
| rs9496393 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9496407 | 1.00[AMR][1000 genomes] |
| rs9496408 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949088 | chr6:142561402-143128849 | Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv1023426 | chr6:142813845-142940262 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv830827 | chr6:142840734-143015005 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:142846600-142865600 | Weak transcription | Right Atrium | heart |
| 2 | chr6:142852200-142853800 | Enhancers | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
