Variant report

Variant	rs9484627
Chromosome Location	chr6:142665596-142665597
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs13437156	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1411147	1.00[AMR][1000 genomes]
rs6921559	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484628	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484629	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484634	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484635	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484636	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484638	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484640	1.00[AMR][1000 genomes]
rs9484641	1.00[AMR][1000 genomes]
rs9484644	1.00[AMR][1000 genomes]
rs9496336	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496350	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496351	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496359	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496362	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496363	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496375	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496376	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496381	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496383	1.00[AMR][1000 genomes]
rs9496384	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496385	1.00[AMR][1000 genomes]
rs9496386	1.00[AMR][1000 genomes]
rs9496387	1.00[AMR][1000 genomes]
rs9496393	1.00[AMR][1000 genomes]
rs9496407	1.00[AMR][1000 genomes]
rs9496408	1.00[AMR][1000 genomes]
rs9496410	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830825	chr6:142585242-142752575	Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142654200-142666400	Weak transcription	HMEC	breast
2	chr6:142654200-142668800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:142654400-142666200	Weak transcription	NHEK	skin
4	chr6:142654800-142676600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:142657400-142678800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:142657600-142665800	Weak transcription	NHLF	lung
7	chr6:142659000-142666000	Weak transcription	Liver	Liver
8	chr6:142662400-142665800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr6:142663200-142665600	Enhancers	HUVEC	blood vessel
10	chr6:142663400-142676400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:142664200-142665600	Enhancers	Hela-S3	cervix
12	chr6:142664800-142667000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:142664800-142667400	Enhancers	Fetal Lung	lung
14	chr6:142665000-142666000	Enhancers	A549	lung
15	chr6:142665200-142668600	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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