Variant report

Variant	rs9484635
Chromosome Location	chr6:142725803-142725804
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs13437156	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1411147	1.00[AMR][1000 genomes]
rs6921559	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7760219	0.82[AFR][1000 genomes]
rs9484627	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484628	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484629	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484636	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484638	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484640	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484641	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484644	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496336	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496350	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496351	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496362	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496363	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496375	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496376	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496381	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496383	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496384	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496385	1.00[AMR][1000 genomes]
rs9496386	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496387	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496393	1.00[AMR][1000 genomes]
rs9496407	1.00[AMR][1000 genomes]
rs9496408	1.00[AMR][1000 genomes]
rs9496410	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830825	chr6:142585242-142752575	Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142698600-142733200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:142708000-142734800	Weak transcription	Esophagus	oesophagus
3	chr6:142710200-142733400	Weak transcription	HSMM	muscle
4	chr6:142712200-142735000	Weak transcription	Fetal Brain Male	brain
5	chr6:142714200-142733200	Weak transcription	HMEC	breast
6	chr6:142718000-142763200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:142719800-142735400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:142720400-142733200	Weak transcription	NHEK	skin
9	chr6:142720600-142736800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:142721600-142749200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr6:142722000-142728000	Weak transcription	Primary T cells from cord blood	blood
12	chr6:142722000-142743400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:142722200-142728800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr6:142722200-142731000	Weak transcription	NHLF	lung
15	chr6:142722200-142731600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:142722200-142734200	Weak transcription	Hela-S3	cervix
17	chr6:142722400-142726000	Weak transcription	Stomach Mucosa	stomach
18	chr6:142722400-142728000	Weak transcription	Small Intestine	intestine
19	chr6:142722400-142728600	Weak transcription	HSMMtube	muscle
20	chr6:142724000-142729400	Weak transcription	Placenta	Placenta
21	chr6:142724600-142726800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:142724600-142731400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:142725000-142727000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:142725000-142727000	Genic enhancers	HepG2	liver
25	chr6:142725000-142732800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr6:142725200-142727000	Genic enhancers	A549	lung
27	chr6:142725400-142728000	Enhancers	Liver	Liver
28	chr6:142725400-142732000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr6:142725800-142726200	Enhancers	Duodenum Mucosa	Duodenum
30	chr6:142725800-142726200	Genic enhancers	HUVEC	blood vessel
31	chr6:142725800-142726600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr6:142725800-142727000	Strong transcription	Primary hematopoietic stem cells	blood
33	chr6:142725800-142727000	Enhancers	Ovary	ovary
34	chr6:142725800-142727600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr6:142725800-142727800	Enhancers	Fetal Lung	lung
36	chr6:142725800-142728400	Enhancers	Fetal Intestine Large	intestine
37	chr6:142725800-142730200	Enhancers	Fetal Intestine Small	intestine

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