Variant report

Variant	rs9497163
Chromosome Location	chr6:145307990-145307991
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1111810	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4896766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6570667	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6917204	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6937673	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9285506	0.87[ASN][1000 genomes]
rs9322008	0.87[ASN][1000 genomes]
rs9322009	0.84[ASN][1000 genomes]
rs9376879	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9386093	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9390266	0.87[ASN][1000 genomes]
rs9403644	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1850377	chr6:145199259-145319640	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv886742	chr6:145269757-145376903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145307600-145308000	Enhancers	Gastric	stomach
2	chr6:145307800-145308200	Enhancers	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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