Variant report
| Variant | rs9285506 |
|---|---|
| Chromosome Location | chr6:145280275-145280276 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs1111810 | 0.85[ASN][1000 genomes] |
| rs11752326 | 0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs13216871 | 0.85[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs1832481 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4896766 | 0.87[ASN][1000 genomes] |
| rs4896767 | 0.86[ASN][1000 genomes] |
| rs6570662 | 0.90[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs6570667 | 0.85[ASN][1000 genomes] |
| rs6917204 | 0.96[ASN][1000 genomes] |
| rs6932709 | 0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6937673 | 0.84[ASN][1000 genomes] |
| rs7753021 | 0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs9322008 | 0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9322009 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9373436 | 0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9376879 | 0.85[ASN][1000 genomes] |
| rs9386093 | 0.85[ASN][1000 genomes] |
| rs9390264 | 0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9390266 | 0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9403636 | 0.85[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs9403640 | 0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9403644 | 0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9497135 | 0.89[EUR][1000 genomes] |
| rs9497163 | 0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1016747 | chr6:144917411-145599874 | Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | esv1850377 | chr6:145199259-145319640 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv886742 | chr6:145269757-145376903 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh | Chromatin interactive region | 2 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:145275800-145282600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
