Variant report

Variant	rs9390264
Chromosome Location	chr6:145275230-145275231
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1111810	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs13194942	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13216473	0.83[CEU][hapmap]
rs13216871	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1416297	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1832481	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2185145	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2211068	0.83[EUR][1000 genomes]
rs6570662	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6570663	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6917204	0.85[ASN][1000 genomes]
rs7742978	0.80[EUR][1000 genomes]
rs7753021	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7769009	0.83[CEU][hapmap]
rs7773947	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9285506	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9322008	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9322009	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9373436	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9373440	0.82[EUR][1000 genomes]
rs9376877	0.86[ASN][1000 genomes]
rs9376878	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9376879	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9386093	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9390266	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9403636	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9403640	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403644	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9403651	0.83[EUR][1000 genomes]
rs9497135	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1850377	chr6:145199259-145319640	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv886742	chr6:145269757-145376903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145272000-145275400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr6:145272000-145275400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr6:145272000-145275800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:145272200-145275400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:145273400-145275600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr6:145274000-145275800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:145274200-145275400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr6:145274200-145275400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:145274200-145277000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:145274200-145280000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr6:145274400-145276800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:145274400-145279600	Enhancers	Osteobl	bone
13	chr6:145274600-145275600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:145274600-145279000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:145274800-145275600	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr6:145274800-145275600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:145274800-145275600	Enhancers	NHDF-Ad	bronchial
18	chr6:145274800-145275800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:145274800-145275800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:145274800-145275800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:145274800-145275800	Enhancers	HMEC	breast
22	chr6:145274800-145275800	Enhancers	NHEK	skin
23	chr6:145274800-145276400	Enhancers	HSMMtube	muscle
24	chr6:145274800-145276800	Enhancers	Placenta Amnion	Placenta Amnion
25	chr6:145274800-145277400	Enhancers	HSMM	muscle
26	chr6:145274800-145278600	Enhancers	NH-A	brain
27	chr6:145275000-145275400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr6:145275000-145275400	Enhancers	A549	lung
29	chr6:145275000-145275600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr6:145275000-145275800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:145275000-145276000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr6:145275000-145280000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:145275200-145275400	Enhancers	Muscle Satellite Cultured Cells	--
34	chr6:145275200-145275400	Enhancers	Rectal Smooth Muscle	rectum
35	chr6:145275200-145275800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr6:145275200-145275800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr6:145275200-145276000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr6:145275200-145276000	Enhancers	Stomach Smooth Muscle	stomach

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