Variant report

Variant	rs9403644
Chromosome Location	chr6:145276905-145276906
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1111810	0.90[ASN][1000 genomes]
rs11752326	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13194942	0.81[ASN][1000 genomes]
rs13216473	0.83[CEU][hapmap]
rs13216871	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1416297	0.81[ASN][1000 genomes]
rs1832481	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2185145	0.81[ASN][1000 genomes]
rs4896766	0.83[ASN][1000 genomes]
rs4896767	0.82[ASN][1000 genomes]
rs6570662	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6570663	0.81[ASN][1000 genomes]
rs6570667	0.80[ASN][1000 genomes]
rs6917204	0.91[ASN][1000 genomes]
rs6932709	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7753021	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7769009	0.83[CEU][hapmap]
rs7773947	0.81[ASN][1000 genomes]
rs9285506	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9322008	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9322009	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9373436	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9376878	0.81[ASN][1000 genomes]
rs9376879	0.90[ASN][1000 genomes]
rs9386093	0.90[ASN][1000 genomes]
rs9390264	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9390266	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9403636	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9403640	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9497135	0.89[EUR][1000 genomes]
rs9497163	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1850377	chr6:145199259-145319640	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv886742	chr6:145269757-145376903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145274200-145277000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:145274200-145280000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:145274400-145279600	Enhancers	Osteobl	bone
4	chr6:145274600-145279000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:145274800-145277400	Enhancers	HSMM	muscle
6	chr6:145274800-145278600	Enhancers	NH-A	brain
7	chr6:145275000-145280000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:145275800-145277000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:145275800-145277000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:145275800-145278400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:145275800-145282600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:145276000-145277000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:145276000-145277000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:145276000-145277000	Weak transcription	A549	lung
15	chr6:145276000-145278200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr6:145276800-145277000	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr6:145276800-145277200	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr6:145276800-145277200	Enhancers	Colon Smooth Muscle	Colon
19	chr6:145276800-145277600	Enhancers	HSMMtube	muscle

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