Variant report

Variant	rs9501843
Chromosome Location	chr6:2449872-2449873
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11242774	0.80[AMR][1000 genomes]
rs2007680	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs761096	0.88[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7744318	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7763441	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7768075	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9378332	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9503194	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531295	chr6:1773436-2724986	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
2	nsv883388	chr6:2093432-2514911	Strong transcription Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
3	nsv883389	chr6:2093432-2776303	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	87 gene(s)	inside rSNPs	diseases
4	nsv1021573	chr6:2246721-2832408	Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	80 gene(s)	inside rSNPs	diseases
5	nsv538102	chr6:2246721-2832408	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	80 gene(s)	inside rSNPs	diseases
6	nsv883390	chr6:2265344-2584919	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
7	nsv883391	chr6:2282747-2507448	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
8	nsv1016878	chr6:2375784-2680476	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
9	nsv498004	chr6:2380300-3313587	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	163 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:2414600-2452000	Weak transcription	Ovary	ovary
2	chr6:2417600-2454200	Weak transcription	Pancreas	Pancrea
3	chr6:2448400-2450000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr6:2448600-2451400	Enhancers	Hela-S3	cervix
5	chr6:2448800-2450000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:2449200-2450000	Enhancers	Placenta Amnion	Placenta Amnion
7	chr6:2449200-2450200	Enhancers	Brain Hippocampus Middle	brain
8	chr6:2449400-2451200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:2449600-2450200	Enhancers	Brain Anterior Caudate	brain
10	chr6:2449600-2450200	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr6:2449600-2450200	Enhancers	Brain Substantia Nigra	brain
12	chr6:2449600-2450600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:2449600-2450600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:2449600-2450600	Weak transcription	Left Ventricle	heart
15	chr6:2449600-2451000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:2449600-2451000	Weak transcription	Adipose Nuclei	Adipose
17	chr6:2449600-2451000	Enhancers	HMEC	breast
18	chr6:2449600-2451600	Weak transcription	HepG2	liver
19	chr6:2449600-2452400	Enhancers	Fetal Heart	heart
20	chr6:2449600-2454600	Weak transcription	Fetal Kidney	kidney
21	chr6:2449600-2455800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:2449600-2460400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr6:2449600-2460400	Weak transcription	Fetal Brain Female	brain
24	chr6:2449600-2461200	Weak transcription	Stomach Smooth Muscle	stomach
25	chr6:2449800-2450600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr6:2449800-2450800	Weak transcription	Fetal Intestine Small	intestine
27	chr6:2449800-2451000	Weak transcription	Fetal Brain Male	brain
28	chr6:2449800-2455200	Weak transcription	Brain Angular Gyrus	brain

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