Variant report

Variant	rs9515558
Chromosome Location	chr13:89970707-89970708
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1023806	0.90[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap]
rs1034231	0.81[ASN][1000 genomes]
rs11618429	0.81[ASN][1000 genomes]
rs11839164	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12854092	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1334201	0.81[ASN][1000 genomes]
rs1334202	0.83[ASN][1000 genomes]
rs1334206	0.95[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap]
rs1413463	0.90[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap]
rs2044348	0.90[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap]
rs2089113	0.89[ASN][1000 genomes]
rs2102238	0.81[ASN][1000 genomes]
rs314530	0.86[JPT][hapmap]
rs314531	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs314572	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs314574	0.89[CHB][hapmap];0.87[JPT][hapmap]
rs4773467	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6492425	0.83[ASN][1000 genomes]
rs6492426	0.83[ASN][1000 genomes]
rs6492427	0.83[ASN][1000 genomes]
rs7139784	0.82[ASN][1000 genomes]
rs7317403	0.81[ASN][1000 genomes]
rs7332403	0.82[ASN][1000 genomes]
rs7332816	0.82[ASN][1000 genomes]
rs9515559	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9522506	0.83[ASN][1000 genomes]
rs9522507	0.83[ASN][1000 genomes]
rs9522509	0.83[ASN][1000 genomes]
rs9522512	0.81[ASN][1000 genomes]
rs9522513	0.81[ASN][1000 genomes]
rs9522514	0.81[ASN][1000 genomes]
rs9522516	0.81[ASN][1000 genomes]
rs9522517	0.81[ASN][1000 genomes]
rs9522518	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9522520	0.80[ASN][1000 genomes]
rs9522527	0.81[ASN][1000 genomes]
rs991342	0.83[ASN][1000 genomes]
rs991343	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915862	chr13:89408920-90118030	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1040210	chr13:89584630-90156186	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1048574	chr13:89650680-90232894	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv832676	chr13:89941212-90090424	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv900859	chr13:89944833-90036166	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:89970200-89972600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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