Variant report

Variant	rs6492425
Chromosome Location	chr13:89971214-89971215
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1023806	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs1034231	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11069920	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11618429	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11839164	0.89[ASN][1000 genomes]
rs12854092	0.83[ASN][1000 genomes]
rs1334201	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1334202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1334206	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs1360716	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1413463	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs1504153	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2044348	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs2089113	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2102238	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2134801	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2348654	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2348655	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs314528	0.85[EUR][1000 genomes]
rs314530	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[EUR][1000 genomes]
rs314531	0.86[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]
rs314562	0.82[EUR][1000 genomes]
rs314563	0.82[EUR][1000 genomes]
rs314565	0.82[EUR][1000 genomes]
rs314570	0.85[EUR][1000 genomes]
rs314572	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs314574	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap]
rs314576	0.85[EUR][1000 genomes]
rs314578	0.82[EUR][1000 genomes]
rs314579	0.82[EUR][1000 genomes]
rs4773467	0.86[ASN][1000 genomes]
rs6492426	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6492427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6492428	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7139784	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7317403	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7325345	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7332403	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7332816	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9301560	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9515558	0.83[ASN][1000 genomes]
rs9515559	0.88[ASN][1000 genomes]
rs9522488	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9522502	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9522506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9522507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9522509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9522512	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9522513	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9522514	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9522515	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9522516	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9522517	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9522518	0.86[ASN][1000 genomes]
rs9522520	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9522527	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9522536	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs991342	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs991343	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915862	chr13:89408920-90118030	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1040210	chr13:89584630-90156186	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1048574	chr13:89650680-90232894	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv832676	chr13:89941212-90090424	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv900859	chr13:89944833-90036166	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:89970200-89972600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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