Variant report

Variant	rs9522488
Chromosome Location	chr13:89939810-89939811
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1023806	0.88[ASN][1000 genomes]
rs11069920	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12877053	0.87[ASN][1000 genomes]
rs12877418	0.97[ASN][1000 genomes]
rs1334202	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1334207	0.85[ASN][1000 genomes]
rs1413463	0.87[ASN][1000 genomes]
rs1504153	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2134801	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2348654	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2348655	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs314528	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs314530	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs314531	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs314562	0.89[AMR][1000 genomes]
rs314563	0.89[AMR][1000 genomes]
rs314565	0.89[AMR][1000 genomes]
rs314570	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs314576	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs314578	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs314579	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4773459	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6492425	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6492426	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6492427	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7325345	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs734050	0.88[ASN][1000 genomes]
rs9522502	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9522506	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9522507	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9522509	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs991342	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900821	chr13:89302824-89941209	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv915862	chr13:89408920-90118030	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1040210	chr13:89584630-90156186	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1048574	chr13:89650680-90232894	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv900844	chr13:89721607-89944833	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv900851	chr13:89797903-89941209	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:89939600-89940200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:89939600-89940400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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