Variant report

Variant	rs1504153
Chromosome Location	chr13:89931769-89931770
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1023806	0.89[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs11069920	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12877053	0.85[ASN][1000 genomes]
rs12877418	0.96[ASN][1000 genomes]
rs1334202	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1334206	0.89[CHB][hapmap];0.94[CHD][hapmap];0.86[JPT][hapmap]
rs1334207	0.83[ASN][1000 genomes]
rs1413463	0.89[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs2044348	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs2089113	0.82[EUR][1000 genomes]
rs2134801	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2348654	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2348655	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs314528	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs314530	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.86[JPT][hapmap];0.84[LWK][hapmap];0.80[MKK][hapmap];0.85[TSI][hapmap];0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs314531	0.87[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.86[JPT][hapmap];0.84[LWK][hapmap];0.86[MEX][hapmap];0.80[MKK][hapmap];0.85[TSI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs314562	0.89[AMR][1000 genomes]
rs314563	0.89[AMR][1000 genomes]
rs314565	0.89[AMR][1000 genomes]
rs314570	0.89[AMR][1000 genomes]
rs314572	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap]
rs314574	1.00[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap]
rs314576	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs314578	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs314579	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4773459	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6492425	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6492426	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6492427	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7325345	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs734050	0.87[ASN][1000 genomes]
rs9522488	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9522502	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9522506	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9522507	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9522509	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs991342	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900821	chr13:89302824-89941209	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv915862	chr13:89408920-90118030	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1040210	chr13:89584630-90156186	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1048574	chr13:89650680-90232894	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv900844	chr13:89721607-89944833	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv900851	chr13:89797903-89941209	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv900857	chr13:89824076-89934019	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:89931200-89932800	Enhancers	Fetal Heart	heart
2	chr13:89931600-89931800	Enhancers	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links