Variant report
| Variant | rs9515559 |
|---|---|
| Chromosome Location | chr13:89975569-89975570 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs1034231 | 0.87[ASN][1000 genomes] |
| rs11618429 | 0.87[ASN][1000 genomes] |
| rs11839164 | 0.86[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12854092 | 0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1334201 | 0.87[ASN][1000 genomes] |
| rs1334202 | 0.88[ASN][1000 genomes] |
| rs1360716 | 0.86[ASN][1000 genomes] |
| rs2089113 | 0.96[ASN][1000 genomes] |
| rs2102238 | 0.87[ASN][1000 genomes] |
| rs4773467 | 0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6492425 | 0.88[ASN][1000 genomes] |
| rs6492426 | 0.88[ASN][1000 genomes] |
| rs6492427 | 0.88[ASN][1000 genomes] |
| rs6492428 | 0.84[ASN][1000 genomes] |
| rs7139784 | 0.89[ASN][1000 genomes] |
| rs7317403 | 0.87[ASN][1000 genomes] |
| rs7332403 | 0.89[ASN][1000 genomes] |
| rs7332816 | 0.89[ASN][1000 genomes] |
| rs9301560 | 0.84[ASN][1000 genomes] |
| rs9515558 | 0.88[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs9522506 | 0.88[ASN][1000 genomes] |
| rs9522507 | 0.88[ASN][1000 genomes] |
| rs9522509 | 0.88[ASN][1000 genomes] |
| rs9522512 | 0.87[ASN][1000 genomes] |
| rs9522513 | 0.87[ASN][1000 genomes] |
| rs9522514 | 0.87[ASN][1000 genomes] |
| rs9522515 | 0.84[ASN][1000 genomes] |
| rs9522516 | 0.87[ASN][1000 genomes] |
| rs9522517 | 0.87[ASN][1000 genomes] |
| rs9522518 | 0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9522520 | 0.86[ASN][1000 genomes] |
| rs9522527 | 0.87[ASN][1000 genomes] |
| rs9522536 | 0.84[ASN][1000 genomes] |
| rs991342 | 0.88[ASN][1000 genomes] |
| rs991343 | 0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv915862 | chr13:89408920-90118030 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv1040210 | chr13:89584630-90156186 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 3 | nsv1048574 | chr13:89650680-90232894 | Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 4 | nsv832676 | chr13:89941212-90090424 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv900859 | chr13:89944833-90036166 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:89972400-89979400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 2 | chr13:89974800-89976200 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
| 3 | chr13:89975200-89976200 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
