Variant report

Variant	rs9526410
Chromosome Location	chr13:48487615-48487616
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1408618	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1974040	0.80[ASN][1000 genomes]
rs2038789	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2274189	0.80[ASN][1000 genomes]
rs2406690	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28874956	0.83[ASN][1000 genomes]
rs4508328	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4558305	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4941616	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4942713	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4942715	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4942717	0.80[ASN][1000 genomes]
rs4942718	0.80[ASN][1000 genomes]
rs61972224	0.80[ASN][1000 genomes]
rs73187725	0.84[ASN][1000 genomes]
rs7321745	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7330169	0.91[ASN][1000 genomes]
rs7337764	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7981303	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7998090	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9526407	0.80[ASN][1000 genomes]
rs9526411	0.83[ASN][1000 genomes]
rs9526414	0.80[ASN][1000 genomes]
rs9526416	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9534856	0.80[ASN][1000 genomes]
rs9534858	0.81[ASN][1000 genomes]
rs9534859	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9534860	0.81[ASN][1000 genomes]
rs9534862	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9534863	0.80[ASN][1000 genomes]
rs9534864	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9534867	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9562775	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3510679	chr13:48236624-48498185	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3510680	chr13:48236624-48498185	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv933980	chr13:48431000-48557419	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv1803690	chr13:48470681-48508091	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48472200-48491400	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr13:48477000-48506400	Weak transcription	Psoas Muscle	Psoas
3	chr13:48478600-48490000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr13:48478800-48491000	Weak transcription	Adipose Nuclei	Adipose
5	chr13:48478800-48491800	Weak transcription	Left Ventricle	heart
6	chr13:48478800-48492200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr13:48479400-48488400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr13:48481000-48493000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr13:48482800-48494400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr13:48486200-48492000	Weak transcription	Skeletal Muscle Male	skeletal muscle

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