Variant report

Variant	rs9562775
Chromosome Location	chr13:48465586-48465587
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SUCLA2-4	chr13:48464985-48466403	XLOC_010601

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11617530	0.82[ASN][1000 genomes]
rs1408618	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2038789	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2147502	0.80[ASN][1000 genomes]
rs2274189	0.81[ASN][1000 genomes]
rs2406690	0.94[EUR][1000 genomes]
rs4142533	0.81[ASN][1000 genomes]
rs4508328	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4558305	0.84[EUR][1000 genomes]
rs4941616	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4942712	0.81[ASN][1000 genomes]
rs4942713	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4942715	0.92[EUR][1000 genomes]
rs4942717	0.81[ASN][1000 genomes]
rs4942718	0.81[ASN][1000 genomes]
rs61972224	0.81[ASN][1000 genomes]
rs73187725	0.85[ASN][1000 genomes]
rs7321745	0.91[EUR][1000 genomes]
rs7330169	0.90[ASN][1000 genomes]
rs7337764	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7981303	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7998090	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9526406	0.81[ASN][1000 genomes]
rs9526407	0.81[ASN][1000 genomes]
rs9526410	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9526414	0.81[ASN][1000 genomes]
rs9526416	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9534856	0.81[ASN][1000 genomes]
rs9534857	0.81[ASN][1000 genomes]
rs9534858	0.81[ASN][1000 genomes]
rs9534859	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9534860	0.81[ASN][1000 genomes]
rs9534862	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9534863	0.81[ASN][1000 genomes]
rs9534864	0.95[EUR][1000 genomes]
rs9534867	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3510679	chr13:48236624-48498185	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3510680	chr13:48236624-48498185	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv933980	chr13:48431000-48557419	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48451000-48480200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr13:48453800-48471600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr13:48457200-48478000	Weak transcription	Adipose Nuclei	Adipose
4	chr13:48461000-48472200	Weak transcription	Spleen	Spleen
5	chr13:48461000-48472400	Weak transcription	Lung	lung
6	chr13:48461000-48478200	Weak transcription	Left Ventricle	heart
7	chr13:48463600-48474600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr13:48464600-48467400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr13:48464800-48469800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr13:48465000-48465800	Enhancers	HSMMtube	muscle
11	chr13:48465000-48467400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr13:48465000-48467400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr13:48465000-48484000	Weak transcription	Primary T cells from cord blood	blood
14	chr13:48465200-48466200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr13:48465200-48478200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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