Variant report

Variant	rs9526416
Chromosome Location	chr13:48498620-48498621
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11617530	0.98[ASN][1000 genomes]
rs11620507	0.90[ASN][1000 genomes]
rs1324801	0.93[ASN][1000 genomes]
rs1324802	0.93[ASN][1000 genomes]
rs1408618	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1555723	0.93[ASN][1000 genomes]
rs1555724	0.93[ASN][1000 genomes]
rs1924811	0.92[ASN][1000 genomes]
rs1974040	0.89[ASN][1000 genomes]
rs2038789	0.81[EUR][1000 genomes]
rs2147502	0.96[ASN][1000 genomes]
rs2274189	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2406690	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28874956	0.95[ASN][1000 genomes]
rs4142533	0.95[ASN][1000 genomes]
rs4508328	0.82[EUR][1000 genomes]
rs4941616	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4942712	0.98[ASN][1000 genomes]
rs4942713	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4942715	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4942717	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4942718	0.99[ASN][1000 genomes]
rs55633570	0.82[ASN][1000 genomes]
rs61972224	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs73187725	0.94[ASN][1000 genomes]
rs7321745	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7329550	0.90[ASN][1000 genomes]
rs7330169	0.87[ASN][1000 genomes]
rs7337764	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7981303	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7998090	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9526406	0.97[ASN][1000 genomes]
rs9526407	0.99[ASN][1000 genomes]
rs9526410	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9526411	0.96[ASN][1000 genomes]
rs9526414	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9534851	0.90[ASN][1000 genomes]
rs9534856	0.99[ASN][1000 genomes]
rs9534857	0.98[ASN][1000 genomes]
rs9534858	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9534859	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9534860	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9534861	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9534862	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9534863	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9534864	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9534867	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9534888	0.83[ASN][1000 genomes]
rs9534895	0.83[ASN][1000 genomes]
rs9534900	0.82[ASN][1000 genomes]
rs9562775	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9567941	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933980	chr13:48431000-48557419	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv1803690	chr13:48470681-48508091	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48477000-48506400	Weak transcription	Psoas Muscle	Psoas
2	chr13:48492200-48510800	Weak transcription	Left Ventricle	heart
3	chr13:48495200-48506800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr13:48496600-48506600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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