Variant report

Variant	rs952879
Chromosome Location	chr7:102666696-102666697
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:102664540..102668660-chr7:102669419..102673254,7	K562	blood:
2	chr7:102665532..102667665-chr7:102714166..102717204,3	K562	blood:
3	chr7:102665867..102668570-chr7:102674851..102677774,2	K562	blood:

Variant related genes	Relation type
ENSG00000170632	Chromatin interaction
ENSG00000161040	Chromatin interaction
ENSG00000236226	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10808120	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11768949	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11972261	0.86[ASN][1000 genomes]
rs11976237	0.88[ASN][1000 genomes]
rs12666317	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13221585	0.96[ASN][1000 genomes]
rs13222980	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13229214	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1608651	0.84[ASN][1000 genomes]
rs1829957	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2222539	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2298854	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4609128	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4729860	0.84[ASN][1000 genomes]
rs4729866	0.94[ASN][1000 genomes]
rs4729873	0.86[ASN][1000 genomes]
rs6978630	0.84[ASN][1000 genomes]
rs7458786	0.92[ASN][1000 genomes]
rs7780405	0.92[ASN][1000 genomes]
rs7789252	0.84[ASN][1000 genomes]
rs7807055	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs869332	0.84[ASN][1000 genomes]
rs955992	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	esv3374257	chr7:102636550-102671589	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102640400-102666800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:102665400-102666800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:102665600-102667200	Enhancers	Primary hematopoietic stem cells	blood
4	chr7:102666400-102668400	Weak transcription	K562	blood

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