Variant report

Variant	rs2298854
Chromosome Location	chr7:102729631-102729632
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NAPEPLD-3	chr7:102729111-102730057	NONHSAT122533

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10808120	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10953380	0.88[ASN][1000 genomes]
rs10953382	0.87[ASN][1000 genomes]
rs11768949	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11770319	0.90[ASN][1000 genomes]
rs11972261	0.83[ASN][1000 genomes]
rs11976237	0.86[ASN][1000 genomes]
rs12666317	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13221585	0.93[ASN][1000 genomes]
rs13221979	0.88[ASN][1000 genomes]
rs13222980	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13229214	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13232194	0.90[ASN][1000 genomes]
rs1608651	0.82[ASN][1000 genomes]
rs1829957	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2222539	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4609128	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4729860	0.83[ASN][1000 genomes]
rs4729866	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4729873	0.97[ASN][1000 genomes]
rs6978630	0.95[ASN][1000 genomes]
rs7458786	0.89[ASN][1000 genomes]
rs7780405	0.94[ASN][1000 genomes]
rs7789252	0.82[ASN][1000 genomes]
rs7796678	0.85[ASN][1000 genomes]
rs7807055	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs869332	0.82[ASN][1000 genomes]
rs952879	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs955992	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv526764	chr7:102701826-102737251	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102716400-102734000	Weak transcription	Esophagus	oesophagus
2	chr7:102716400-102745400	Weak transcription	Spleen	Spleen
3	chr7:102716600-102735600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:102716600-102737600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:102716600-102746400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:102716600-102746600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr7:102716600-102746800	Weak transcription	Right Atrium	heart
8	chr7:102716600-102760200	Weak transcription	Lung	lung
9	chr7:102716600-102762200	Weak transcription	Colonic Mucosa	Colon
10	chr7:102716600-102768200	Weak transcription	Right Ventricle	heart
11	chr7:102716800-102753600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr7:102716800-102768400	Weak transcription	Stomach Mucosa	stomach
13	chr7:102717000-102746600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr7:102717000-102746800	Weak transcription	Fetal Heart	heart
15	chr7:102717600-102738600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:102717600-102770200	Weak transcription	Small Intestine	intestine
17	chr7:102717800-102768000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr7:102718200-102729800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr7:102719400-102769600	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr7:102722200-102738600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr7:102722600-102738600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr7:102723000-102731000	Strong transcription	K562	blood
23	chr7:102723000-102738200	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr7:102723400-102732200	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr7:102723400-102734000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr7:102723400-102734200	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr7:102723400-102738600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr7:102723400-102738600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr7:102723400-102746400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr7:102723600-102730400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr7:102723600-102731000	Strong transcription	A549	lung
32	chr7:102723600-102732400	Strong transcription	Liver	Liver
33	chr7:102723600-102734200	Strong transcription	Placenta	Placenta
34	chr7:102723600-102734600	Strong transcription	Fetal Intestine Large	intestine
35	chr7:102723600-102738600	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr7:102723600-102746400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr7:102723800-102729800	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr7:102723800-102730600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr7:102723800-102732600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr7:102723800-102738600	Strong transcription	Fetal Thymus	thymus
41	chr7:102724000-102730200	Strong transcription	Duodenum Mucosa	Duodenum
42	chr7:102724000-102730600	Strong transcription	Primary T cells from cord blood	blood
43	chr7:102724000-102730600	Strong transcription	NHEK	skin
44	chr7:102724000-102730800	Strong transcription	Skeletal Muscle Female	skeletal muscle
45	chr7:102724000-102732400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr7:102724000-102735800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr7:102724000-102745800	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr7:102724000-102760000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr7:102724000-102770200	Weak transcription	Psoas Muscle	Psoas
50	chr7:102724200-102729800	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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