Variant report

Variant	rs13232194
Chromosome Location	chr7:102742554-102742555
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:102740547..102743350-chr7:102743703..102746108,2	MCF-7	breast:
2	chr7:102733635..102737595-chr7:102740497..102744082,4	MCF-7	breast:
3	chr7:102741620..102743668-chr7:102745262..102747983,3	MCF-7	breast:
4	chr7:102740059..102742895-chr7:102744093..102746013,2	K562	blood:

Variant related genes	Relation type
ENSG00000170632	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10808120	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10953380	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10953382	0.90[ASN][1000 genomes]
rs10953383	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11514917	0.95[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap]
rs11770319	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11972261	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs11976237	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs12666317	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12667116	0.87[AMR][1000 genomes]
rs13221585	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13221979	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13222980	0.86[ASN][1000 genomes]
rs13229214	0.80[ASN][1000 genomes]
rs13233521	0.95[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap]
rs13242493	0.91[JPT][hapmap]
rs1608651	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1829957	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2222539	0.83[ASN][1000 genomes]
rs2298854	0.90[ASN][1000 genomes]
rs4609128	0.80[ASN][1000 genomes]
rs4620204	0.95[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap]
rs4729860	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs4729866	0.80[CEU][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4729873	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6947403	0.91[JPT][hapmap]
rs6960428	0.95[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap]
rs6978630	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7780405	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7785272	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7789252	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7796678	0.92[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7807055	0.80[ASN][1000 genomes]
rs847646	0.80[CHB][hapmap];0.91[JPT][hapmap]
rs847647	0.91[JPT][hapmap]
rs847648	0.91[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap]
rs847649	0.95[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap]
rs847656	0.91[JPT][hapmap]
rs847658	0.91[JPT][hapmap]
rs869332	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs9718453	0.95[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102716400-102745400	Weak transcription	Spleen	Spleen
2	chr7:102716600-102746400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:102716600-102746600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:102716600-102746800	Weak transcription	Right Atrium	heart
5	chr7:102716600-102760200	Weak transcription	Lung	lung
6	chr7:102716600-102762200	Weak transcription	Colonic Mucosa	Colon
7	chr7:102716600-102768200	Weak transcription	Right Ventricle	heart
8	chr7:102716800-102753600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr7:102716800-102768400	Weak transcription	Stomach Mucosa	stomach
10	chr7:102717000-102746600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr7:102717000-102746800	Weak transcription	Fetal Heart	heart
12	chr7:102717600-102770200	Weak transcription	Small Intestine	intestine
13	chr7:102717800-102768000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr7:102719400-102769600	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr7:102723400-102746400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr7:102723600-102746400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr7:102724000-102745800	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr7:102724000-102760000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr7:102724000-102770200	Weak transcription	Psoas Muscle	Psoas
20	chr7:102725200-102770200	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr7:102725400-102753600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr7:102725600-102746400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr7:102725600-102746400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr7:102725600-102760200	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr7:102725800-102770000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr7:102727800-102753400	Weak transcription	Brain Angular Gyrus	brain
27	chr7:102727800-102768000	Weak transcription	Fetal Brain Male	brain
28	chr7:102728000-102760000	Weak transcription	Rectal Smooth Muscle	rectum
29	chr7:102728600-102753400	Weak transcription	NHDF-Ad	bronchial
30	chr7:102729800-102745800	Weak transcription	HepG2	liver
31	chr7:102730000-102744200	Weak transcription	Brain Cingulate Gyrus	brain
32	chr7:102730200-102742600	Weak transcription	NHLF	lung
33	chr7:102730200-102746400	Weak transcription	Ovary	ovary
34	chr7:102730200-102760200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr7:102730200-102769600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr7:102730600-102742800	Weak transcription	Brain Anterior Caudate	brain
37	chr7:102731000-102753400	Weak transcription	Hela-S3	cervix
38	chr7:102732400-102744800	Weak transcription	Aorta	Aorta
39	chr7:102732400-102746000	Weak transcription	Brain Germinal Matrix	brain
40	chr7:102732400-102746000	Weak transcription	Fetal Intestine Small	intestine
41	chr7:102732400-102753800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr7:102732600-102746400	Weak transcription	Fetal Stomach	stomach
43	chr7:102732600-102753400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr7:102733600-102744000	Strong transcription	HUES64 Cell Line	embryonic stem cell
45	chr7:102734200-102753200	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr7:102734200-102753600	Weak transcription	Esophagus	oesophagus
47	chr7:102734200-102770600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr7:102734400-102746600	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr7:102734400-102753400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr7:102736000-102768000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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