Variant report

Variant	rs7780405
Chromosome Location	chr7:102700247-102700248
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:102692413..102696625-chr7:102698429..102700505,5	K562	blood:
2	chr7:102630195..102631725-chr7:102699498..102701582,2	K562	blood:
3	chr7:102611593..102615684-chr7:102700169..102704441,4	K562	blood:
4	chr7:102696664..102700307-chr7:102700461..102702793,3	K562	blood:

Variant related genes	Relation type
ENSG00000230257	Chromatin interaction
ENSG00000161040	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10241865	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs10242028	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs10257543	0.84[CEU][hapmap]
rs10273725	0.84[CEU][hapmap];0.83[CHD][hapmap];0.82[JPT][hapmap]
rs10499952	0.92[CEU][hapmap];0.88[GIH][hapmap]
rs10808120	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10953380	0.83[ASN][1000 genomes]
rs10953382	0.83[ASN][1000 genomes]
rs11514917	0.85[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap]
rs11768949	0.88[ASN][1000 genomes]
rs11770319	0.85[ASN][1000 genomes]
rs11972019	0.82[CEU][hapmap]
rs11972261	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs11972644	0.84[CEU][hapmap]
rs11976237	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs11978670	0.84[CEU][hapmap]
rs11978768	0.80[CEU][hapmap]
rs11978799	0.84[CEU][hapmap];0.90[CHD][hapmap];0.87[JPT][hapmap]
rs12056296	0.85[CEU][hapmap]
rs12537821	1.00[MEX][hapmap]
rs12537977	0.86[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap]
rs12540583	1.00[MEX][hapmap]
rs12666317	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs13221585	0.96[ASN][1000 genomes]
rs13221979	0.83[ASN][1000 genomes]
rs13222980	0.99[ASN][1000 genomes]
rs13229214	0.93[ASN][1000 genomes]
rs13232194	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs13233521	0.86[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap]
rs13242493	0.92[CEU][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];0.91[JPT][hapmap]
rs1608651	0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1829957	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2009503	0.92[CEU][hapmap]
rs2159022	0.84[CEU][hapmap]
rs2222539	0.96[ASN][1000 genomes]
rs2298854	0.94[ASN][1000 genomes]
rs41501847	0.83[CEU][hapmap];0.90[CHD][hapmap];0.87[JPT][hapmap]
rs4609128	0.93[ASN][1000 genomes]
rs4620204	0.86[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap]
rs4729860	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4729866	0.96[ASN][1000 genomes]
rs4729873	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6465877	0.84[CEU][hapmap]
rs6465878	0.86[JPT][hapmap]
rs6465879	0.84[CEU][hapmap]
rs6465882	0.92[CEU][hapmap];0.88[GIH][hapmap]
rs6465885	0.85[CEU][hapmap];0.90[GIH][hapmap]
rs6942855	0.84[CEU][hapmap]
rs6947403	0.92[CEU][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap]
rs6949150	0.83[CEU][hapmap]
rs6953980	0.84[CEU][hapmap];0.90[CHD][hapmap];0.87[JPT][hapmap]
rs6956781	0.84[CEU][hapmap]
rs6957434	0.84[CEU][hapmap]
rs6960428	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs6968713	0.92[CEU][hapmap]
rs6975451	0.84[CEU][hapmap]
rs6978630	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7458786	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7779618	0.83[CEU][hapmap]
rs7785272	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7789252	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7794668	0.86[CHB][hapmap];0.90[CHD][hapmap];0.87[JPT][hapmap]
rs7807055	0.93[ASN][1000 genomes]
rs847646	0.91[JPT][hapmap]
rs847647	0.92[CEU][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];0.91[JPT][hapmap]
rs847648	0.85[CHB][hapmap];0.93[CHD][hapmap];0.87[JPT][hapmap]
rs847649	0.86[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap]
rs847652	0.92[CEU][hapmap];0.88[GIH][hapmap]
rs847656	0.92[CEU][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];0.91[JPT][hapmap]
rs847658	0.92[CEU][hapmap];0.91[JPT][hapmap]
rs869332	0.91[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs952879	0.92[ASN][1000 genomes]
rs955992	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9718453	0.86[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	esv1793320	chr7:102677917-102706209	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102679200-102713800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:102684200-102708000	Weak transcription	Pancreas	Pancrea
3	chr7:102691400-102701800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:102692800-102712800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:102694800-102702000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:102699600-102700400	Enhancers	Ovary	ovary
7	chr7:102699800-102700400	Enhancers	Liver	Liver
8	chr7:102700000-102700400	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr7:102700200-102700400	Enhancers	Aorta	Aorta

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