Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:39175580..39178240-chr13:39180911..39182841,2	K562	blood:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs2197884	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2218719	0.85[EUR][1000 genomes]
rs2323889	0.85[EUR][1000 genomes]
rs2595565	0.92[EUR][1000 genomes]
rs2595566	0.92[EUR][1000 genomes]
rs2595568	0.92[EUR][1000 genomes]
rs2805087	0.84[EUR][1000 genomes]
rs4277225	0.85[EUR][1000 genomes]
rs4497533	0.85[EUR][1000 genomes]
rs61947524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7320842	0.85[EUR][1000 genomes]
rs7338838	0.85[EUR][1000 genomes]
rs7983501	0.85[EUR][1000 genomes]
rs7989282	0.86[EUR][1000 genomes]
rs9315594	0.93[CEU][hapmap]
rs9315597	0.99[ASN][1000 genomes]
rs9548392	0.83[EUR][1000 genomes]
rs9548414	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9548415	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9548417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548418	0.97[ASN][1000 genomes]
rs9566348	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9566349	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576561	0.83[EUR][1000 genomes]
rs9576569	0.85[EUR][1000 genomes]
rs9576581	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832584	chr13:39074265-39284724	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9532260	SOHLH2	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39169200-39181000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:39172800-39187600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:39177400-39180600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr13:39178000-39178200	Enhancers	H9 Cell Line	embryonic stem cell
5	chr13:39178000-39178200	Enhancers	K562	blood

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