Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12875233	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs2197884	0.99[ASN][1000 genomes]
rs35267996	0.86[EUR][1000 genomes]
rs61947497	0.86[EUR][1000 genomes]
rs61947524	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9315595	0.92[CEU][hapmap]
rs9315596	0.86[EUR][1000 genomes]
rs9315597	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9532256	0.86[EUR][1000 genomes]
rs9532258	0.86[EUR][1000 genomes]
rs9532260	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9548393	0.86[EUR][1000 genomes]
rs9548396	0.86[EUR][1000 genomes]
rs9548398	0.86[EUR][1000 genomes]
rs9548399	0.86[EUR][1000 genomes]
rs9548400	0.86[EUR][1000 genomes]
rs9548412	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs9548414	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548417	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9548418	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9566346	0.86[EUR][1000 genomes]
rs9566348	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9566349	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9576581	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832584	chr13:39074265-39284724	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39169200-39181000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:39172600-39172800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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