Variant report

Variant	rs9548400
Chromosome Location	chr13:39139445-39139446
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12875233	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2323889	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35267996	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4277225	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4497533	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61947497	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7320842	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7338838	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7983501	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7993470	0.91[ASN][1000 genomes]
rs9315584	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9315596	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9532256	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9532258	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9548383	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9548385	0.86[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9548392	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9548393	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548396	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548398	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548399	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9548412	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9548414	0.86[EUR][1000 genomes]
rs9548415	0.86[EUR][1000 genomes]
rs9566344	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9566346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9566348	0.86[EUR][1000 genomes]
rs9576561	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9576569	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9576581	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832584	chr13:39074265-39284724	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39138200-39139600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr13:39138200-39139600	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr13:39138800-39139800	Weak transcription	Brain Germinal Matrix	brain
4	chr13:39138800-39140000	Weak transcription	Fetal Lung	lung
5	chr13:39139000-39139600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr13:39139000-39140400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr13:39139400-39139800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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