Variant report

Variant	rs9576561
Chromosome Location	chr13:39117474-39117475
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12875233	0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2323889	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35267996	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4277225	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4470033	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4497533	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61947497	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61947524	0.84[EUR][1000 genomes]
rs7320842	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7338838	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7983501	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9315585	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9315594	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9315595	0.94[JPT][hapmap];0.96[TSI][hapmap]
rs9315596	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9532249	0.84[ASN][1000 genomes]
rs9532256	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9532258	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9532260	0.83[EUR][1000 genomes]
rs9548392	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548393	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9548396	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9548398	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9548399	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9548400	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9548412	0.94[JPT][hapmap];0.96[TSI][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9548417	0.84[EUR][1000 genomes]
rs9566343	0.91[ASN][1000 genomes]
rs9566346	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9566349	0.84[EUR][1000 genomes]
rs9576569	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv832584	chr13:39074265-39284724	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9576561	SOHLH2	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39116400-39118000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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