Variant report

Variant	rs9535331
Chromosome Location	chr13:50336233-50336234
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1008939	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12019576	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3742096	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58303577	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61961485	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61961487	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9526603	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9535318	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9535320	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9535323	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9535325	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9535327	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9535346	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs957474	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900072	chr13:50266109-50381016	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv900073	chr13:50286218-50381016	Enhancers Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	esv1818134	chr13:50306897-50374102	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv900074	chr13:50317104-50381016	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv1038	chr13:50324773-50359990	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv900075	chr13:50331992-50376858	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50266400-50349000	Weak transcription	Esophagus	oesophagus
2	chr13:50296600-50338600	Weak transcription	Ovary	ovary
3	chr13:50300600-50345600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr13:50306000-50351600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr13:50308000-50356000	Weak transcription	Fetal Kidney	kidney
6	chr13:50317600-50343600	Weak transcription	Primary T cells from cord blood	blood
7	chr13:50320400-50336800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr13:50320600-50337400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr13:50320600-50337800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr13:50320800-50340400	Weak transcription	HUVEC	blood vessel
11	chr13:50321000-50363800	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr13:50324400-50340400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr13:50324600-50350800	Weak transcription	HSMM	muscle
14	chr13:50324600-50351000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr13:50324800-50338600	Weak transcription	Right Atrium	heart
16	chr13:50326200-50349000	Weak transcription	Left Ventricle	heart
17	chr13:50328200-50338600	Weak transcription	Right Ventricle	heart
18	chr13:50328400-50338600	Weak transcription	Pancreas	Pancrea
19	chr13:50328400-50349000	Weak transcription	Lung	lung
20	chr13:50328600-50349000	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr13:50330800-50349000	Weak transcription	HepG2	liver
22	chr13:50333400-50338800	Weak transcription	Fetal Heart	heart
23	chr13:50333800-50336600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
24	chr13:50334000-50338000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr13:50334000-50352200	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr13:50334200-50351200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr13:50334400-50337400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr13:50334400-50350800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr13:50334400-50351400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr13:50334600-50336600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr13:50334600-50350200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr13:50334800-50336400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr13:50334800-50336600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr13:50334800-50337600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr13:50335000-50336600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
36	chr13:50335000-50356400	Weak transcription	Primary B cells from cord blood	blood
37	chr13:50335200-50337800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr13:50335200-50339800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr13:50335200-50341800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr13:50335200-50342800	Weak transcription	GM12878-XiMat	blood
41	chr13:50335200-50347200	Weak transcription	Primary B cells from peripheral blood	blood
42	chr13:50335200-50349400	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr13:50335400-50337200	Weak transcription	Dnd41	blood
44	chr13:50335400-50339800	Weak transcription	Primary hematopoietic stem cells	blood
45	chr13:50335400-50339800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr13:50335400-50340000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr13:50335400-50343000	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr13:50335600-50337000	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr13:50335600-50337800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr13:50336000-50336400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon

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