Variant report

Variant	rs9535318
Chromosome Location	chr13:50315838-50315839
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1008939	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12019576	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1407439	0.80[AMR][1000 genomes]
rs2273817	0.80[AMR][1000 genomes]
rs35526541	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3742096	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58303577	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61961485	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61961487	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7328465	0.87[AMR][1000 genomes]
rs7983049	0.88[AMR][1000 genomes]
rs7996689	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9316478	0.85[AMR][1000 genomes]
rs9526603	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9526606	0.87[AMR][1000 genomes]
rs9535320	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535323	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9535325	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535327	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535331	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9535346	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9535360	0.87[AMR][1000 genomes]
rs9535361	0.87[AMR][1000 genomes]
rs9535362	0.83[AMR][1000 genomes]
rs9535366	0.84[AMR][1000 genomes]
rs957474	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900072	chr13:50266109-50381016	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv900073	chr13:50286218-50381016	Enhancers Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	esv1818134	chr13:50306897-50374102	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50266200-50316000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr13:50266400-50349000	Weak transcription	Esophagus	oesophagus
3	chr13:50273200-50326000	Weak transcription	Aorta	Aorta
4	chr13:50273200-50333800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr13:50277000-50318400	Weak transcription	Hela-S3	cervix
6	chr13:50290000-50324000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr13:50290000-50334000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr13:50290200-50316800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr13:50293200-50326000	Weak transcription	Fetal Brain Male	brain
10	chr13:50294200-50324000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr13:50294400-50333000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr13:50296200-50330400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr13:50296400-50320200	Weak transcription	Spleen	Spleen
14	chr13:50296600-50330400	Weak transcription	Small Intestine	intestine
15	chr13:50296600-50338600	Weak transcription	Ovary	ovary
16	chr13:50297000-50322400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr13:50298000-50327600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr13:50299200-50327600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr13:50299400-50319400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr13:50300600-50345600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr13:50300800-50321800	Weak transcription	Brain Anterior Caudate	brain
22	chr13:50301000-50319200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr13:50301200-50316000	Weak transcription	Primary B cells from peripheral blood	blood
24	chr13:50301200-50323600	Weak transcription	Colon Smooth Muscle	Colon
25	chr13:50301200-50327800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr13:50302800-50333800	Weak transcription	Thymus	Thymus
27	chr13:50303200-50319400	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr13:50303200-50334000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr13:50304400-50316000	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr13:50304400-50321400	Weak transcription	Duodenum Mucosa	Duodenum
31	chr13:50304600-50316000	Weak transcription	Fetal Muscle Trunk	muscle
32	chr13:50305600-50319400	Weak transcription	Fetal Intestine Small	intestine
33	chr13:50305600-50319600	Weak transcription	Fetal Stomach	stomach
34	chr13:50305800-50319400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr13:50305800-50320200	Weak transcription	Fetal Muscle Leg	muscle
36	chr13:50306000-50316600	Weak transcription	Fetal Intestine Large	intestine
37	chr13:50306000-50318400	Weak transcription	Placenta	Placenta
38	chr13:50306000-50319000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr13:50306000-50320200	Weak transcription	Stomach Smooth Muscle	stomach
40	chr13:50306000-50324000	Weak transcription	HSMMtube	muscle
41	chr13:50306000-50351600	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr13:50306200-50316000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr13:50306200-50323200	Weak transcription	Brain Germinal Matrix	brain
44	chr13:50306200-50334200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr13:50306200-50336200	Weak transcription	Adipose Nuclei	Adipose
46	chr13:50306600-50316200	Weak transcription	NH-A	brain
47	chr13:50306600-50316800	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr13:50306600-50318200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr13:50306600-50319000	Weak transcription	Osteobl	bone
50	chr13:50306600-50323200	Weak transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links