Variant report

Variant	rs7983049
Chromosome Location	chr13:50397120-50397121
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:50389687..50391557-chr13:50395854..50397614,2	K562	blood:
2	chr13:50383263..50385911-chr13:50396889..50399144,2	K562	blood:
3	chr13:50366548..50368191-chr13:50395507..50397150,2	MCF-7	breast:
4	chr13:50365656..50370137-chr13:50393100..50397316,5	K562	blood:

Variant related genes	Relation type
ENSG00000102753	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1008939	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12019576	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1407439	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs3742096	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3901336	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58303577	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61961485	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61961487	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7324563	0.90[EUR][1000 genomes]
rs7328465	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7332209	1.00[CHB][hapmap]
rs748678	0.89[CEU][hapmap]
rs7982919	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7996689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9316478	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9526603	0.83[AMR][1000 genomes]
rs9526606	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9535318	0.88[AMR][1000 genomes]
rs9535320	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9535323	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9535325	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9535327	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9535346	1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9535351	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9535360	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9535361	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9535362	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9535366	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs957474	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50394000-50403800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr13:50396000-50401400	Weak transcription	HepG2	liver
3	chr13:50396000-50414400	Weak transcription	Right Atrium	heart

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