Variant report

Variant	rs7328465
Chromosome Location	chr13:50402177-50402178
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:50365843..50369914-chr13:50400944..50405026,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000102753	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1008939	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12019576	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3742096	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3901336	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58303577	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61961485	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61961487	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7324563	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7326209	0.80[EUR][1000 genomes]
rs7982919	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7983049	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7996689	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9316478	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9526603	0.81[AMR][1000 genomes]
rs9526606	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9535318	0.87[AMR][1000 genomes]
rs9535320	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9535323	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9535325	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9535327	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9535346	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9535360	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9535361	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9535362	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9535366	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs957474	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50394000-50403800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr13:50396000-50414400	Weak transcription	Right Atrium	heart
3	chr13:50400600-50403200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr13:50400600-50403200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr13:50401000-50403000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr13:50401400-50403000	Enhancers	HepG2	liver
7	chr13:50401600-50402200	Enhancers	Fetal Intestine Large	intestine
8	chr13:50401600-50402200	Enhancers	Fetal Intestine Small	intestine
9	chr13:50401600-50402400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr13:50402000-50402400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood

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