Variant report

Variant	rs1008939
Chromosome Location	chr13:50385946-50385947
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:50365277..50368611-chr13:50385585..50388603,4	MCF-7	breast:
2	chr13:50374857..50376657-chr13:50383914..50386507,2	K562	blood:

Variant related genes	Relation type
ENSG00000102753	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12019576	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35526541	0.82[AMR][1000 genomes]
rs3742096	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3901336	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58303577	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61961485	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61961487	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7324563	0.89[EUR][1000 genomes]
rs7328465	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7982919	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7983049	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7996689	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9316478	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9526603	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9526606	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9535318	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9535320	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9535323	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9535325	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9535327	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9535331	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9535346	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9535360	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9535361	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9535362	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9535366	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs957474	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50383200-50387200	Enhancers	Fetal Intestine Small	intestine
2	chr13:50383600-50389400	Enhancers	Fetal Heart	heart
3	chr13:50384200-50390200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr13:50384400-50387400	Enhancers	Fetal Intestine Large	intestine
5	chr13:50384600-50386200	Enhancers	Osteobl	bone
6	chr13:50384600-50387200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr13:50384800-50386200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr13:50384800-50389600	Weak transcription	Placenta	Placenta
9	chr13:50385000-50386000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr13:50385000-50386200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr13:50385000-50389400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr13:50385200-50386000	Flanking Active TSS	HepG2	liver
13	chr13:50385400-50386600	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr13:50385400-50387200	Weak transcription	Fetal Lung	lung
15	chr13:50385600-50386800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr13:50385600-50387200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr13:50385600-50387800	Weak transcription	A549	lung
18	chr13:50385600-50388200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr13:50385800-50386000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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