Variant report

Variant	rs7324563
Chromosome Location	chr13:50419158-50419159
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:50411667..50415006-chr13:50418421..50422258,4	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1008939	0.89[EUR][1000 genomes]
rs12019576	0.88[EUR][1000 genomes]
rs1407439	0.90[CEU][hapmap];0.89[CHB][hapmap];0.81[TSI][hapmap]
rs3742096	0.95[CEU][hapmap];0.89[CHB][hapmap];0.80[GIH][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes]
rs3901336	0.88[EUR][1000 genomes]
rs58303577	0.81[EUR][1000 genomes]
rs61961485	0.82[EUR][1000 genomes]
rs61961487	0.83[EUR][1000 genomes]
rs7326209	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7328465	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7332209	0.89[CHB][hapmap]
rs748678	0.90[CEU][hapmap];0.81[TSI][hapmap]
rs7982919	0.90[CEU][hapmap];0.89[CHB][hapmap];0.87[EUR][1000 genomes]
rs7983049	0.89[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs7996689	0.90[CEU][hapmap];0.89[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.92[TSI][hapmap];0.91[EUR][1000 genomes]
rs9316478	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9526606	0.88[EUR][1000 genomes]
rs9535320	0.81[EUR][1000 genomes]
rs9535323	0.81[EUR][1000 genomes]
rs9535325	0.81[EUR][1000 genomes]
rs9535327	0.81[EUR][1000 genomes]
rs9535346	0.89[CHB][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9535351	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs9535360	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9535361	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9535362	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9535366	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs957474	0.82[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7324563	ITM2B	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50411400-50422000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr13:50413000-50421600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr13:50415000-50420600	Weak transcription	K562	blood
4	chr13:50415400-50421600	Weak transcription	HepG2	liver
5	chr13:50415400-50421800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr13:50415600-50421800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr13:50417600-50421800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr13:50418800-50421800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr13:50418800-50421800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr13:50418800-50421800	Weak transcription	NHDF-Ad	bronchial

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