Variant report

Variant	rs9539301
Chromosome Location	chr13:62349436-62349437
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11148563	0.80[EUR][1000 genomes]
rs4551929	0.80[EUR][1000 genomes]
rs73213567	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7999738	0.89[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs947025	0.80[EUR][1000 genomes]
rs9528383	0.80[EUR][1000 genomes]
rs9528384	0.80[EUR][1000 genomes]
rs9539259	0.80[EUR][1000 genomes]
rs9539260	0.80[EUR][1000 genomes]
rs9539269	0.80[EUR][1000 genomes]
rs9539270	0.80[EUR][1000 genomes]
rs9539274	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761266	chr13:61928642-62690828	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv948810	chr13:62003256-62968196	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1038867	chr13:62302878-62594554	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv832629	chr13:62320369-62497238	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:62348600-62351800	Enhancers	Brain Inferior Temporal Lobe	brain
2	chr13:62348800-62349600	Enhancers	Brain Hippocampus Middle	brain
3	chr13:62349400-62349600	Enhancers	Brain Substantia Nigra	brain
4	chr13:62349400-62350600	Weak transcription	Brain Anterior Caudate	brain
5	chr13:62349400-62351200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr13:62349400-62351800	Enhancers	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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