Variant report

Variant	rs4551929
Chromosome Location	chr13:62298774-62298775
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11148563	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1538918	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4884384	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4886346	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs5006270	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73213567	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7329223	0.85[EUR][1000 genomes]
rs73492723	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7992500	0.86[EUR][1000 genomes]
rs7999738	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8002358	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs947025	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9528358	0.89[EUR][1000 genomes]
rs9528359	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9528360	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9528361	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9528363	0.89[EUR][1000 genomes]
rs9528383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9528384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9539244	0.89[EUR][1000 genomes]
rs9539252	0.91[EUR][1000 genomes]
rs9539253	0.91[EUR][1000 genomes]
rs9539259	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9539260	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9539269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9539270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9539274	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9539301	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761266	chr13:61928642-62690828	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv948810	chr13:62003256-62968196	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv900250	chr13:62147535-62321073	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1041037	chr13:62290172-62337672	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:62296400-62302000	Weak transcription	Fetal Lung	lung
2	chr13:62298600-62299200	Weak transcription	Fetal Stomach	stomach
3	chr13:62298600-62302000	Weak transcription	Rectal Smooth Muscle	rectum

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