Variant report

Variant	rs8002358
Chromosome Location	chr13:62240785-62240786
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11148563	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1538918	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4551929	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4884384	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4886346	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs5006270	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73213567	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs73492723	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7983113	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7999738	0.84[EUR][1000 genomes]
rs947025	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9528358	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9528359	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9528360	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9528361	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9528363	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9528383	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9528384	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9539244	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9539252	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9539253	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9539259	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9539260	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9539269	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9539270	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9539274	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761266	chr13:61928642-62690828	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv948810	chr13:62003256-62968196	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1053698	chr13:62108064-62271909	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv900250	chr13:62147535-62321073	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:62237600-62240800	Enhancers	Fetal Intestine Large	intestine
2	chr13:62239600-62241400	Enhancers	HepG2	liver
3	chr13:62239800-62243400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr13:62239800-62247000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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