Variant report
| Variant | rs73213567 |
|---|---|
| Chromosome Location | chr13:62346529-62346530 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs11148563 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs1538918 | 0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs4551929 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4884384 | 0.84[EUR][1000 genomes] |
| rs4886346 | 0.84[EUR][1000 genomes] |
| rs5006270 | 0.84[EUR][1000 genomes] |
| rs7329223 | 0.80[EUR][1000 genomes] |
| rs73492723 | 0.86[AFR][1000 genomes];0.84[EUR][1000 genomes] |
| rs7983113 | 0.82[AFR][1000 genomes] |
| rs7992500 | 0.91[EUR][1000 genomes] |
| rs7999738 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs8002358 | 0.86[AFR][1000 genomes];0.84[EUR][1000 genomes] |
| rs947025 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs9528358 | 0.84[EUR][1000 genomes] |
| rs9528359 | 0.86[AFR][1000 genomes];0.84[EUR][1000 genomes] |
| rs9528360 | 0.84[EUR][1000 genomes] |
| rs9528361 | 0.86[AFR][1000 genomes];0.84[EUR][1000 genomes] |
| rs9528363 | 0.84[EUR][1000 genomes] |
| rs9528383 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs9528384 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs9539244 | 0.84[EUR][1000 genomes] |
| rs9539252 | 0.85[EUR][1000 genomes] |
| rs9539253 | 0.85[EUR][1000 genomes] |
| rs9539259 | 0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs9539260 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs9539269 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs9539270 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs9539274 | 0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs9539301 | 0.81[AFR][1000 genomes];0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2761266 | chr13:61928642-62690828 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv948810 | chr13:62003256-62968196 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | nsv1038867 | chr13:62302878-62594554 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv832629 | chr13:62320369-62497238 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:62345200-62348800 | Weak transcription | Brain Hippocampus Middle | brain |
