Variant report

Variant	rs4886346
Chromosome Location	chr13:62177890-62177891
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11148563	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1538918	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4551929	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4884384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs5006270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73213567	0.84[EUR][1000 genomes]
rs73492723	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7983113	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7999738	0.84[EUR][1000 genomes]
rs8002358	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs947025	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9528358	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9528359	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9528360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9528361	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9528363	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9528383	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9528384	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9539244	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9539252	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9539253	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9539259	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9539260	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9539269	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9539270	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9539274	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948661	chr13:61906251-62179649	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2761266	chr13:61928642-62690828	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv948810	chr13:62003256-62968196	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1053698	chr13:62108064-62271909	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv900249	chr13:62133250-62218811	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv900250	chr13:62147535-62321073	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv528090	chr13:62175238-62190998	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:62177000-62178800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:62177800-62179000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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