Variant report

Variant	rs9540265
Chromosome Location	chr13:65486281-65486282
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12429159	0.90[ASN][1000 genomes]
rs12872247	0.90[ASN][1000 genomes]
rs1398564	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2203219	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34838047	0.90[ASN][1000 genomes]
rs36074096	0.90[ASN][1000 genomes]
rs7324067	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7324889	0.90[ASN][1000 genomes]
rs7327214	0.90[ASN][1000 genomes]
rs7328300	0.90[ASN][1000 genomes]
rs7330230	0.90[ASN][1000 genomes]
rs7994510	0.90[ASN][1000 genomes]
rs9317459	0.92[ASN][1000 genomes]
rs9317461	0.88[ASN][1000 genomes]
rs9528841	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9540250	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9592377	0.88[ASN][1000 genomes]
rs9592379	0.90[ASN][1000 genomes]
rs9598849	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9598865	0.86[ASN][1000 genomes]
rs9598867	0.88[ASN][1000 genomes]
rs9598868	0.88[ASN][1000 genomes]
rs9598869	0.88[ASN][1000 genomes]
rs9598870	0.90[ASN][1000 genomes]
rs9598871	0.90[ASN][1000 genomes]
rs9598882	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3367739	chr13:64805577-65549276	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv900364	chr13:65381616-65542385	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv900365	chr13:65385600-65492716	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv900366	chr13:65385600-65512989	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv900367	chr13:65385600-65558413	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv900368	chr13:65398639-65577032	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv832635	chr13:65419368-65574767	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv900369	chr13:65423068-65577032	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv900370	chr13:65434926-65542385	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv900371	chr13:65434926-65568081	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv900372	chr13:65449535-65577032	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv3350969	chr13:65462000-65492446	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:65484400-65487000	Enhancers	HMEC	breast
2	chr13:65485600-65487000	Enhancers	Muscle Satellite Cultured Cells	--
3	chr13:65485600-65487000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr13:65485600-65487000	Enhancers	HUVEC	blood vessel
5	chr13:65485600-65487200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr13:65485600-65487200	Enhancers	NH-A	brain
7	chr13:65486000-65486400	Active TSS	A549	lung
8	chr13:65486200-65489000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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