Variant report

Variant	rs9541015
Chromosome Location	chr13:67708943-67708944
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:67702842..67705667-chr13:67707651..67711312,4	K562	blood:
2	chr13:67685964..67690654-chr13:67706296..67711657,6	K562	blood:
3	chr13:67686001..67691093-chr13:67707345..67712221,5	K562	blood:
4	chr13:67701562..67704458-chr13:67707651..67710683,4	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1028899	0.95[ASN][1000 genomes]
rs10507741	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1323923	1.00[CHB][hapmap]
rs17517286	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17517438	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17588668	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs17589427	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927811	0.95[ASN][1000 genomes]
rs1927812	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs260140	0.82[CEU][hapmap]
rs2875517	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs61959407	0.95[ASN][1000 genomes]
rs7330064	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7987478	1.00[CHB][hapmap]
rs7992494	0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7999949	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs8001394	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9317633	1.00[CHB][hapmap]
rs9317642	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9529180	0.82[CEU][hapmap]
rs9529185	0.82[CEU][hapmap]
rs9529188	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9529189	0.95[ASN][1000 genomes]
rs9529190	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9540950	1.00[CHB][hapmap]
rs9540967	1.00[CHB][hapmap]
rs9540995	0.82[CEU][hapmap]
rs9540996	0.82[CEU][hapmap]
rs9541004	0.82[CEU][hapmap]
rs9541006	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9541007	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9541008	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9541012	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9541013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9571705	1.00[CHB][hapmap]
rs9571714	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv430581	chr13:67572850-67762288	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv430582	chr13:67589898-67762299	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1037217	chr13:67589937-67728156	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1039600	chr13:67593961-67726047	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv541823	chr13:67593961-67726047	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv1053514	chr13:67687520-67775011	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67707600-67709000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:67708200-67709000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr13:67708200-67710600	Active TSS	Stomach Smooth Muscle	stomach
4	chr13:67708400-67709000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:67708400-67709000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr13:67708400-67709000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr13:67708400-67709000	Flanking Active TSS	Primary T cells from cord blood	blood
8	chr13:67708400-67709000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr13:67708400-67709000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr13:67708400-67709000	Active TSS	Aorta	Aorta
11	chr13:67708400-67709000	Active TSS	Brain Angular Gyrus	brain
12	chr13:67708400-67709000	Active TSS	Brain Cingulate Gyrus	brain
13	chr13:67708400-67709000	Active TSS	Duodenum Mucosa	Duodenum
14	chr13:67708400-67709000	Active TSS	Right Atrium	heart
15	chr13:67708400-67709000	Active TSS	Right Ventricle	heart
16	chr13:67708400-67709000	Flanking Active TSS	Dnd41	blood
17	chr13:67708400-67709200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr13:67708400-67709200	Active TSS	Brain Anterior Caudate	brain
19	chr13:67708400-67709200	Active TSS	Brain Substantia Nigra	brain
20	chr13:67708400-67709200	Flanking Active TSS	HUVEC	blood vessel
21	chr13:67708400-67709200	Active TSS	NHDF-Ad	bronchial
22	chr13:67708400-67709200	Flanking Active TSS	Osteobl	bone
23	chr13:67708400-67709400	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr13:67708400-67709600	Active TSS	Brain Inferior Temporal Lobe	brain
25	chr13:67708400-67709800	Active TSS	Brain Hippocampus Middle	brain
26	chr13:67708600-67709000	Enhancers	H1 Cell Line	embryonic stem cell
27	chr13:67708600-67709000	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr13:67708600-67709000	Enhancers	Primary B cells from peripheral blood	blood
29	chr13:67708600-67709000	Active TSS	Primary hematopoietic stem cells short term culture	blood
30	chr13:67708600-67709000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr13:67708600-67709000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr13:67708600-67709000	Active TSS	Adipose Nuclei	Adipose
33	chr13:67708600-67709000	Enhancers	Liver	Liver
34	chr13:67708600-67709000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
35	chr13:67708600-67709000	Active TSS	Colon Smooth Muscle	Colon
36	chr13:67708600-67709000	Active TSS	Fetal Kidney	kidney
37	chr13:67708600-67709000	Active TSS	Pancreatic Islets	Pancreatic Islet
38	chr13:67708600-67709000	Active TSS	Fetal Muscle Leg	muscle
39	chr13:67708600-67709000	Active TSS	Fetal Stomach	stomach
40	chr13:67708600-67709000	Active TSS	Ovary	ovary
41	chr13:67708600-67709000	Active TSS	Psoas Muscle	Psoas
42	chr13:67708600-67709000	Active TSS	Rectal Mucosa Donor 29	rectum
43	chr13:67708600-67709000	Active TSS	Skeletal Muscle Male	skeletal muscle
44	chr13:67708600-67709000	Active TSS	HSMMtube	muscle
45	chr13:67708600-67709200	Active TSS	Primary B cells from cord blood	blood
46	chr13:67708600-67709200	Active TSS	NHLF	lung
47	chr13:67708600-67709600	Active TSS	K562	blood
48	chr13:67708600-67710000	Enhancers	Fetal Heart	heart
49	chr13:67708800-67709000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr13:67708800-67709000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links