Variant report

Variant	rs954411
Chromosome Location	chr14:69754502-69754503
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:69709010..69710084-chr14:69753996..69754976,4	MCF-7	breast:
2	chr14:69714407..69715207-chr14:69754200..69755300,4	MCF-7	breast:
3	chr14:69595719..69596845-chr14:69754005..69754946,3	MCF-7	breast:
4	chr14:69754386..69755016-chr14:69829801..69830400,2	MCF-7	breast:
5	chr14:69595775..69596478-chr14:69753974..69754740,2	MCF-7	breast:
6	chr14:69753330..69756214-chr14:69863394..69865238,2	MCF-7	breast:
7	chr14:69727609..69728342-chr14:69754055..69754863,2	MCF-7	breast:
8	chr1:5069365..5072073-chr14:69754412..69757076,2	MCF-7	breast:
9	chr14:69748078..69749756-chr14:69753267..69755131,2	MCF-7	breast:
10	chr14:69754499..69755460-chr14:69813579..69814482,2	MCF-7	breast:
11	chr14:69726192..69727254-chr14:69754071..69754910,3	MCF-7	breast:
12	chr14:69714246..69715551-chr14:69753965..69755230,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000100626	Chromatin interaction
ENSG00000100632	Chromatin interaction
ENSG00000029364	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11158801	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12437334	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12890931	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1890941	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7140574	0.98[ASN][1000 genomes]
rs7141942	0.96[ASN][1000 genomes]
rs7143336	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69735800-69771600	Weak transcription	Fetal Intestine Small	intestine
2	chr14:69738200-69758200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:69749000-69758000	Weak transcription	Fetal Heart	heart
4	chr14:69750200-69760600	Weak transcription	Pancreas	Pancrea
5	chr14:69753000-69754600	Weak transcription	HepG2	liver
6	chr14:69753600-69755200	Enhancers	Right Ventricle	heart
7	chr14:69753600-69755200	Enhancers	NHLF	lung
8	chr14:69753600-69755400	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr14:69753600-69755400	Enhancers	Adipose Nuclei	Adipose
10	chr14:69753600-69755400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr14:69753600-69755400	Enhancers	Stomach Smooth Muscle	stomach
12	chr14:69753600-69759400	Enhancers	NHDF-Ad	bronchial
13	chr14:69753800-69754600	Enhancers	Brain Cingulate Gyrus	brain
14	chr14:69753800-69754600	Enhancers	Fetal Brain Male	brain
15	chr14:69753800-69755000	Enhancers	Brain Hippocampus Middle	brain
16	chr14:69753800-69755000	Enhancers	Rectal Smooth Muscle	rectum
17	chr14:69753800-69755200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr14:69753800-69755200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr14:69753800-69755200	Enhancers	Colon Smooth Muscle	Colon
20	chr14:69753800-69755200	Enhancers	NH-A	brain
21	chr14:69753800-69755400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr14:69753800-69755400	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr14:69753800-69755400	Enhancers	Fetal Stomach	stomach
24	chr14:69753800-69755400	Enhancers	Ovary	ovary
25	chr14:69753800-69755400	Enhancers	Right Atrium	heart
26	chr14:69753800-69756000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr14:69753800-69759400	Enhancers	Fetal Muscle Trunk	muscle
28	chr14:69753800-69759400	Enhancers	Fetal Muscle Leg	muscle
29	chr14:69754000-69754600	Enhancers	Brain Anterior Caudate	brain
30	chr14:69754000-69754600	Enhancers	Fetal Kidney	kidney
31	chr14:69754000-69755200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr14:69754000-69755200	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr14:69754000-69755400	Enhancers	Liver	Liver
34	chr14:69754000-69758800	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr14:69754200-69755000	Enhancers	HSMM	muscle
36	chr14:69754200-69755200	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr14:69754200-69755200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr14:69754200-69755200	Enhancers	A549	lung
39	chr14:69754200-69755400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr14:69754200-69755600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr14:69754200-69755600	Enhancers	Spleen	Spleen
42	chr14:69754200-69759400	Enhancers	Left Ventricle	heart
43	chr14:69754400-69754800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr14:69754400-69754800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr14:69754400-69755200	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr14:69754400-69755200	Enhancers	Duodenum Mucosa	Duodenum
47	chr14:69754400-69757600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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