Variant report

Variant	rs9551746
Chromosome Location	chr13:30394624-30394625
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10492458	1.00[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11147399	0.81[CHB][hapmap];0.92[CHD][hapmap];0.91[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17625384	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17631187	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs278046	0.84[ASN][1000 genomes]
rs278050	0.92[CHD][hapmap]
rs278051	0.92[CHD][hapmap];1.00[GIH][hapmap];0.83[TSI][hapmap];0.82[EUR][1000 genomes]
rs9550497	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9551740	0.93[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9551742	1.00[CHB][hapmap];0.96[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9551747	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9634356	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs980524	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899961	chr13:30226924-30407273	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30376600-30420600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr13:30385800-30403000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:30385800-30406800	Weak transcription	Pancreas	Pancrea
4	chr13:30385800-30410600	Weak transcription	Small Intestine	intestine
5	chr13:30386000-30406200	Weak transcription	Fetal Intestine Small	intestine
6	chr13:30389000-30395800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr13:30391200-30410600	Weak transcription	Ovary	ovary
8	chr13:30392000-30415600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr13:30392600-30397600	Weak transcription	NHDF-Ad	bronchial
10	chr13:30393000-30404400	Weak transcription	Osteobl	bone
11	chr13:30393200-30396600	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr13:30393200-30404200	Weak transcription	HSMM	muscle
13	chr13:30393600-30395000	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr13:30393600-30396800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr13:30393800-30395400	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr13:30393800-30406800	Weak transcription	Primary T cells from cord blood	blood
17	chr13:30393800-30406800	Weak transcription	Colon Smooth Muscle	Colon
18	chr13:30394000-30410600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr13:30394200-30395600	Weak transcription	Primary B cells from cord blood	blood
20	chr13:30394200-30395600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr13:30394200-30396000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr13:30394200-30396600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr13:30394200-30413400	Weak transcription	Primary hematopoietic stem cells	blood
24	chr13:30394400-30407600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr13:30394400-30410600	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr13:30394600-30396600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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