Variant report

Variant	rs9551747
Chromosome Location	chr13:30399520-30399521
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10492458	0.84[ASN][1000 genomes]
rs11147399	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17625384	0.92[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17631187	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs278046	0.81[ASN][1000 genomes]
rs9550497	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9551740	0.92[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9551742	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9551746	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9634356	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs980524	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899961	chr13:30226924-30407273	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30376600-30420600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr13:30385800-30403000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:30385800-30406800	Weak transcription	Pancreas	Pancrea
4	chr13:30385800-30410600	Weak transcription	Small Intestine	intestine
5	chr13:30386000-30406200	Weak transcription	Fetal Intestine Small	intestine
6	chr13:30391200-30410600	Weak transcription	Ovary	ovary
7	chr13:30392000-30415600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr13:30393000-30404400	Weak transcription	Osteobl	bone
9	chr13:30393200-30404200	Weak transcription	HSMM	muscle
10	chr13:30393800-30406800	Weak transcription	Primary T cells from cord blood	blood
11	chr13:30393800-30406800	Weak transcription	Colon Smooth Muscle	Colon
12	chr13:30394000-30410600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr13:30394200-30413400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr13:30394400-30407600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr13:30394400-30410600	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr13:30395800-30403000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr13:30397000-30405800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr13:30397800-30404400	Weak transcription	NHDF-Ad	bronchial
19	chr13:30398600-30407000	Weak transcription	Brain Hippocampus Middle	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links