Variant report

Variant	rs9634356
Chromosome Location	chr13:30366001-30366002
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30343717..30345488-chr13:30365364..30367751,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10492458	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11147399	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17625384	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17631187	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs278046	0.84[ASN][1000 genomes]
rs278051	1.00[CEU][hapmap]
rs9550497	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9550500	1.00[CEU][hapmap]
rs9551735	0.83[EUR][1000 genomes]
rs9551740	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9551742	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9551746	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9551747	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs980524	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899961	chr13:30226924-30407273	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30333200-30368200	Weak transcription	Aorta	Aorta
2	chr13:30333600-30376200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr13:30341200-30373200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr13:30359000-30367200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr13:30360400-30368000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr13:30360600-30368000	Weak transcription	Fetal Intestine Large	intestine
7	chr13:30360600-30374800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr13:30361400-30367400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr13:30361800-30373000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr13:30362400-30370800	Weak transcription	NHDF-Ad	bronchial
11	chr13:30362400-30375600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr13:30362600-30372600	Weak transcription	Small Intestine	intestine
13	chr13:30362800-30366800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr13:30362800-30368400	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr13:30363200-30373200	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr13:30363400-30368000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr13:30363400-30372200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr13:30363400-30375400	Weak transcription	Lung	lung
19	chr13:30363800-30385000	Weak transcription	Left Ventricle	heart
20	chr13:30364200-30366200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr13:30364200-30372200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr13:30364400-30367200	Enhancers	Pancreatic Islets	Pancreatic Islet
23	chr13:30364800-30366600	Enhancers	Brain Hippocampus Middle	brain
24	chr13:30365000-30368200	Enhancers	Brain Anterior Caudate	brain
25	chr13:30365000-30373000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr13:30365200-30366200	Enhancers	Stomach Mucosa	stomach
27	chr13:30365200-30370600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr13:30365400-30366600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr13:30365400-30368000	Enhancers	Brain Substantia Nigra	brain
30	chr13:30365600-30366200	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr13:30365600-30368400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr13:30365800-30366400	Enhancers	Brain Cingulate Gyrus	brain
33	chr13:30365800-30366800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr13:30365800-30366800	Enhancers	Muscle Satellite Cultured Cells	--
35	chr13:30365800-30367000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr13:30365800-30367000	Enhancers	Osteobl	bone
37	chr13:30365800-30367600	Enhancers	Brain Germinal Matrix	brain
38	chr13:30365800-30383200	Weak transcription	Ovary	ovary
39	chr13:30366000-30366600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr13:30366000-30366800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr13:30366000-30368000	Weak transcription	Pancreas	Pancrea
42	chr13:30366000-30368800	Weak transcription	Liver	Liver
43	chr13:30366000-30375200	Weak transcription	Gastric	stomach
44	chr13:30366000-30375600	Weak transcription	Brain Angular Gyrus	brain

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