Variant report

Variant	rs9561907
Chromosome Location	chr13:96223333-96223334
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1000600	0.90[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4143093	0.94[ASN][1000 genomes]
rs4459440	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4497528	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7990560	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9302082	0.89[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9556489	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9561901	0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs9590305	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96206600-96231000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:96206800-96230200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr13:96208600-96230000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr13:96209200-96229000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr13:96210400-96229800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr13:96212400-96231000	Weak transcription	Fetal Kidney	kidney
7	chr13:96217000-96231200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr13:96217200-96228800	Weak transcription	NH-A	brain
9	chr13:96217200-96229400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr13:96217800-96225400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr13:96217800-96231400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr13:96218200-96224800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr13:96220000-96224200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr13:96220000-96229800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr13:96220200-96226200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr13:96221200-96225000	Weak transcription	Pancreas	Pancrea
17	chr13:96221200-96228000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr13:96221400-96228800	Weak transcription	HSMMtube	muscle
19	chr13:96221400-96229200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr13:96222600-96231800	Weak transcription	Placenta	Placenta
21	chr13:96222800-96224200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr13:96222800-96224200	Weak transcription	Hela-S3	cervix
23	chr13:96222800-96231000	Weak transcription	A549	lung
24	chr13:96223000-96224200	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr13:96223000-96239400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr13:96223200-96227600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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